CodonCode Aligner 3.7.1 was released on September 21, 2010. New in this version is the option to use 'n' in consensus sequences to replace '-' at gaps. This option is useful when comparing contigs with MUSCLE to avoid unwanted deletions of gaps, for example when working with projects that contain large deletions. For additional details, please check the CodonCode Aligner blog.
In addition, this update includes a number of important bug fixes. All users of version 3.0 to 3.6.1 should upgrade to this version.
Version 3.7 is a free upgrade for users of CodonCode Aligner 3.0 to 3.6. Users upgrading from version 2 will need new license keys to use this version.If you have questions about your license key or support agreement, or would like to provide feedback, please contact CodonCode's support team.
Installers can be downloaded from http://www.codoncode.com/aligner/download.htm. If you are updating from an older version of CodonCode Aligner, please make sure to follow the update instructions on the download page.