CodonCode Aligner 3.5.7 was released on June 14, 2010. This version includes performance several important bug fixes. All users of CodonCode Aligner version 3.0 to 3.5.6 should update to this version.
Version 3.5 introduced a number of new features and improvements, for example the ability to create neighbor-joining trees for contigs and new consensus method options.
Version 3.5 is a free upgrade for users of CodonCode Aligner 3.0. Users upgrading from version 2 will need new license keys to use this version.If you have questions about your license key or support agreement, or would like to provide feedback, please contact CodonCode's support team.
Installers can be downloaded from http://www.codoncode.com/aligner/download.htm. If you are updating from an older version of CodonCode Aligner, please make sure to follow the update instructions on the download page.