CodonCode Aligner 3.0.3 was released on July 7, 2009. This version adds support for recent changes in Mac OS X, and addresses a problem that some Windows users had with license key returns on congested networks.
Version 3.0 of CodonCode Aligner introduced a number of new features and improvements, including improved support for larger sequencing projects and faster sequence assembly. Users upgrading from version 2 may need new license keys to use this version. Version 3 is a free upgrade for all users with a current update and support agreement as of December 30, 2008. If you have questions about your license key or support agreement, or would like to provide feedback, please contact CodonCode's support team.
Installers can be downloaded from http://www.codoncode.com/aligner/download.htm. If you are updating from an older version of CodonCode Aligner, please make sure to follow the update instructions on the download page.