CodonCode Aligner Forum

Thanks for the links, is there a way to use "Align in Groups" to assemble to a reference sequence (i.e. Sequencher's "To Reference by Name")

I believe the new Reference Shortening feature in v 3.5 which allows automatic clipping of very long reference sequences to the region you want to look at addresses the multi-exon support previously discussed in this thread? I'd like to try it but unfortunately there are no notes where to find it or...

Sorry to hear that the exon feature will not appear in the next build but at least its on the list. It would certainly be ok to contact me with questions about this and any other proposed feature. I'm not sure why emails were not received if sent to the address provided at registration. I haven't no...

Could I make a request to add this to the 'wish list' as such a function would also be extremely useful in cases where we are doing SNP discovery in cell line cDNA. We could use genomic reference which has known SNPs annotated in it. It would be the reverse of Sequenchers ability to insert large gap...

I am assembling genomic resequencing data for a specific gene and would like to align to reference so that I can use a single reference file for all exons and have each assembly (by assay name) be the size of the amplicon rather than the huge open reading frame genomic sequence. I can achieve this b...