CodonCode Aligner Forum

The "Limited to 7 days - system time cannot be verified" message is shown in the Aligner License Server because the License Server cannot verify the correct time over the internet. Therefore the server gives you a 7 day limit for travel licenses. In order to check out travel license keys l...

For aligning small DNA fragments to a longer sequence please make sure to change the alignment preferences in CodonCode Aligner. Use the "End to end alignments" setting and change the following alignment parameters to be smaller than the DNA fragments that you want to align: - Min. overlap...

If CodonCode Aligner can connect to the License Server, licenses will usually be returned automatically when you quit CodonCode Aligner. However, on rare occasions, CodonCode Aligner is unable to return a license even if it is connected to the network and can communicate with the License Server. Ple...

CodonCode Aligner cannot read Sequencher project files directly, but it is easy to export Sequencher projects in a file format that CodonCode Aligner can read - the "CAF" file format (for "Common Assembly Format"). To import a Sequencher project into CodonCode Aligner, you must f...